Publications

"In Nature's infinite book of secrecy, a little can I read"

- William Shakespeare

(18) Anup Som (2017). Bioinformatics Strategies for Stem Cell Research (Edited Book: Stem Cells from Culture Dish to Clinic, Nova Science Publishers (USA), ISBN: 978-1-53612-732-4).

(17) P. Narad, K. C. Upadhyaya, Anup Som (2017). Reconstruction, visualization and explorative analysis of human pluripotency network. Network Biology 7(3): 57-75.

(16) Anup Som (2015). Causes, consequences and solutions of phylogenetic incongruence. Briefings in Bioinformatics 16(3), 536-548.

(15) Anup Som (2013). Genome-scale approach and the accuracy of phylogenetic methods. Journal of Phylogenetics and Evolutionary Biology 1 (3), 1000116.

(14) Anup Som, M. Luštrek, N. K. Singh, G. Fuellen. Derivation of an interaction/regulation network describing pluripotency in human. Gene 502, 99-107, 2012.

(13) Anup Som, C. Harder, B. Greber, M. Siatkowski, et al. (2010). The PluriNetWork: An Electronic Representation of the Network Underlying Pluripotency in Mouse, and Its Applications. PLoS One 5(12), e15165, 2010.

(12) G. Warsow, B.Greber, S. Falk, C. Harder, M. Siatkowski, Anup Som, et al. (2010). ExprEssence - Revealing the essence of differential experimental data in the context of an interaction/regulation network. BMC Systems Biology 4(64), 2010.

(11) Anup Som (2009). ML or NJ-MCL? A comparison between two robust phylogenetic methods. Computational Biology & Chemistry 33(5), 373-378, 2009.

(10) Anup Som and G. Fuellen (2009). The effect of heterotachy in multigene analysis using the neighbor joining method. Molecular Phylogenetics and Evolution 52, 846-851, 2009.

(9) Anup Som (2007). A new approach for estimating the efficiencies of the nucleotide substitution models. Theory in Biosciences 125(2), 133-145, 2007.

(8) Anup Som (2006). Theoretical foundation to estimate the relative efficiencies of the JC+Γ model and the JC model in obtaining the correct phylogenetic tree. Gene 385, 103-110, 2006.

(7) I. Mukhopadhyay , Anup Som , and S. Sahoo (2006). Word Organization in Coding DNA: A Mathematical Model. Theory in Biosciences 125, 1-17, 2006.

(6) Anup Som, S. Sahoo, I. Mukhopadhyay, and J. Chakrabarti (2003). Scaling Violations in Coding DNA. Europhysics Letters 62(2), 271-277, 2003.

(5) Anup Som, S. Sahoo, and J. Chakrabarti (2003). Coding DNA sequences: Statistical distributions. Mathematical Biosciences 183, 49-61, 2003.

(4) Anup Som, S. Chattopadhyay, J. Chakrabarti, and D. Bandhyopadhyay (2001). Codon distributions in DNA. Physical Review E 63(5), 51908-51915, 2001.

(3) S. Chattopadhyay, J. Chakrabarti, D. Bondhapadhyay, and Anup Som (2001). Identification of human proteins using the linguist's tools. Indian Journal of Biochemistry & Biophysics 38(1 & 2), 124-127.

(2) S. Chattopadhyay, Anup Som, S. Sahoo, and J. Chakrabarti (2000). Order and fluctuations in DNA sequences. Indian Journal of Physics 74B(1), 1-39, 2000

(1) S. Tarafdar, P. Nandy, S. Sahoo, Anup Som, J. Chakrabarti, and A. Nandy (1999). Self-similarity and scaling exponent for DNA walk model in two and four dimensions. Indian Journal of Physics 73B(2), 337-343, 1999.